Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-110   LEU-111  19.8 19.6 12.5 -5.7 105.8 101.9 -2.7
 LEU-111   ASP-112  16.6 16.3 -1.2 -1.3 119.5 120.3 -9.7
 ASP-112   THR-113  13.6 13.3 -9.8 -10.2 57.9 57.7 2.6
 THR-113   LYS-114  10.4 10.4 -7.0 6.4 108.7 119.3 -5.7
 LYS-114   GLY-115  7.7 8.2 12.6 15.4 70.1 85.5 12.4
 GLY-115   PRO-116  4.7 5.0 -17.5 7.4 91.4 82.0 15.8
 PRO-116   GLU-117  0.9 1.3 64.6 -10.4 39.8 41.7 97.5
 GLU-117   ILE-118  3.2 3.4 11.4 -14.3 104.9 97.3 -15.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-214   VAL-215  10.1 11.2 2.4 17.1 33.4 38.2 26.2
 VAL-215   ASP-216  7.6 8.3 -30.5 49.3 127.7 149.0 86.0
 ASP-216   LEU-217  7.2 9.1 -102.4 57.7 123.8 121.9 -91.1
 LEU-217   PRO-218  3.7 5.5 22.9 -4.6 68.2 64.8 1.7
 PRO-218   ALA-219  3.5 4.8 -7.1 8.0 57.9 54.5 6.2
 ALA-219   VAL-220  5.2 6.6 3.0 -8.8 62.0 86.8 -11.7
 VAL-220   SER-221  4.8 5.1 85.3 -85.9 55.7 66.1 -34.4
 SER-221   GLU-222  2.9 3.0 -0.3 25.7 154.5 141.0 59.4
 GLU-222   LYS-223  4.1 4.2 1.2 -15.9 108.6 101.4 13.8
 LYS-223   ASP-224  7.1 7.4 -4.5 2.2 70.7 76.2 23.0
 ASP-224   ILE-225  7.3 7.6 9.0 0.2 46.8 42.0 15.9
 ILE-225   GLN-226  8.6 8.1 -25.1 -4.5 106.4 110.7 -1.2
 GLN-226   ASP-227  10.3 10.6 41.1 -15.5 128.9 135.6 -43.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees