Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-118   LYS-119  8.4 8.4 -11.9 12.5 45.0 45.3 3.8
 LYS-119   GLY-120  6.2 6.7 -4.0 -8.4 91.1 82.4 3.4
 GLY-120   PRO-121  3.0 3.2 -2.0 -8.4 85.5 76.3 -7.6
 PRO-121   GLU-122  1.0 1.4 -80.0 43.5 21.9 22.1 107.3
 GLU-122   ILE-123  3.5 3.5 5.3 12.1 98.1 89.3 1.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-217   LEU-218  9.3 9.0 39.4 -50.3 120.6 116.0 11.4
 LEU-218   PRO-219  6.0 5.5 -6.6 -3.9 55.4 65.8 18.3
 PRO-219   ILE-220  3.9 3.4 18.0 -10.2 62.6 57.7 18.5
 ILE-220   ILE-221  3.5 3.0 -3.3 10.1 75.0 62.7 19.0
 ILE-221   GLY-222  2.2 2.3 -16.6 5.6 61.9 61.3 20.4
 GLY-222   ASP-223  2.5 2.0 -3.5 7.5 49.2 44.0 -9.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees