Hypothetical Transcriptional Regulator In Qaca 5'Region

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-57   GLU-58  3.6 3.4 4.8 -1.0 61.0 65.0 11.0
 GLU-58   SER-59  1.6 3.0 10.8 -0.3 20.4 26.1 28.2
 SER-59   LYS-60  4.0 5.3 -2.5 -2.6 127.5 134.8 -12.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-87   THR-88  13.3 13.0 -9.0 14.2 65.3 76.5 -7.4
 THR-88   THR-89  12.4 13.0 -33.5 8.6 101.2 107.6 -19.6
 THR-89   GLU-90  8.9 9.8 157.0 55.8 47.2 10.6 -371.6
 GLU-90   TYR-91  9.0 10.2 -36.4 66.1 125.1 106.8 -6.3
 TYR-91   TYR-92  5.5 13.8 -165.6 166.9 122.5 97.0 45.4
 TYR-92   TYR-93  4.1 13.2 94.7 -37.9 70.8 80.6 149.9
 TYR-93   PRO-94  7.4 9.9 159.7 -15.0 60.2 28.9 333.6
 PRO-94   LEU-95  9.6 11.2 15.0 20.3 11.4 39.8 92.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-107   LYS-108  6.2 6.2 26.8 -35.5 125.2 144.7 37.5
 LYS-108   THR-109  7.3 7.0 22.6 -23.8 83.5 109.3 2.9
 THR-109   ASN-110  7.4 6.7 -12.3 12.4 153.1 131.8 9.6
 ASN-110   SER-111  10.2 10.1 -5.0 10.5 139.7 120.6 10.4
 SER-111   ILE-112  9.6 9.6 -35.8 21.0 127.6 155.2 -37.8
 ILE-112   ASN-113  6.1 6.8 14.4 -12.1 64.0 56.5 11.7
 ASN-113   GLU-114  7.4 8.1 62.5 -24.5 26.6 53.4 87.5
 GLU-114   LYS-115  10.0 10.9 -31.4 7.8 137.6 159.7 -54.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees