Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-84   LYS-85  9.9 10.1 -17.1 6.3 118.3 120.7 -23.0
 LYS-85   GLY-86  7.2 8.0 13.6 8.9 67.4 75.7 27.1
 GLY-86   PRO-87  4.6 4.8 -15.5 7.9 96.5 83.8 -3.2
 PRO-87   GLU-88  1.0 1.1 75.7 -20.4 36.9 35.0 124.4
 GLU-88   ILE-89  2.7 3.2 -16.7 11.9 81.4 87.6 -12.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-174   ARG-175  13.6 13.8 -16.0 10.5 32.1 46.3 17.7
 ARG-175   GLY-176  12.2 11.8 23.8 -9.9 84.2 78.8 6.0
 GLY-176   VAL-177  8.4 8.0 13.0 -0.5 123.2 127.5 -18.4
 VAL-177   ASN-178  7.2 7.1 15.8 -1.4 94.4 99.7 29.8
 ASN-178   LEU-179  4.5 4.8 28.4 -14.9 107.0 105.4 -3.4
 LEU-179   PRO-180  6.1 6.9 -2.1 -15.4 68.5 54.8 -18.5
 PRO-180   GLY-181  5.2 6.4 -150.9 -164.2 93.5 85.9 23.9
 GLY-181   CYS-182  8.3 10.1 -28.9 -7.8 126.4 156.5 -54.9
 CYS-182   ASP-183  9.5 10.2 158.6 -149.2 29.1 53.4 25.7
 ASP-183   VAL-184  9.6 10.5 28.3 -1.0 41.8 35.6 58.2
 VAL-184   ASP-185  7.4 7.8 2.3 -39.7 27.0 34.1 -86.6
 ASP-185   LEU-186  8.2 8.7 -37.9 61.9 121.9 142.6 58.8
 LEU-186   PRO-187  4.6 5.5 16.9 1.9 65.9 63.5 0.7
 PRO-187   ALA-188  4.6 5.5 0.9 -10.0 110.7 115.8 -2.2
 ALA-188   VAL-189  6.3 6.5 23.4 3.9 71.5 73.5 51.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees