Mediator Of DNA Damage Checkpoint Protein 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-1932   ARG-1933  12.7 14.0 -31.0 4.7 100.7 101.8 -149.7
 ARG-1933   THR-1934  10.8 11.7 -8.3 33.3 156.3 147.4 175.4
 THR-1934   VAL-1935  10.9 11.9 3.2 -2.8 63.4 76.4 8.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-1937   LEU-1938  8.4 8.6 -2.5 2.2 112.8 114.9 -6.1
 LEU-1938   CYS-1939  5.3 5.8 1.0 -1.3 124.8 125.4 -30.3
 CYS-1939   ALA-1940  3.2 3.6 -0.9 -1.0 91.5 90.9 5.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-1992   ARG-1993  11.7 11.1 20.2 -7.1 66.6 75.0 -58.3
 ARG-1993   ARG-1994  10.0 9.5 19.0 -7.6 78.1 66.3 -17.5
 ARG-1994   LEU-1995  7.0 7.5 -31.2 6.2 52.8 46.2 165.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees