Myosin Va

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-470   LYS-471  6.7 6.3 9.8 -6.0 129.4 131.5 17.0
 LYS-471   LEU-472  5.3 4.8 -2.9 -0.1 92.1 91.1 -1.9
 LEU-472   GLU-473  2.4 2.7 12.6 -8.2 34.0 36.4 17.5
 GLU-473   GLN-474  1.7 1.4 -0.1 4.5 87.1 85.8 16.3
 GLN-474   GLU-475  4.2 3.2 -9.4 2.7 59.8 59.2 4.5
 GLU-475   GLU-476  3.4 2.4 -3.8 0.4 123.0 121.2 -3.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-482   PRO-483  9.2 8.3 9.2 0.0 76.0 77.1 24.3
 ASP-488   PHE-489  8.5 8.2 -29.4 36.2 141.1 127.5 26.1
 PHE-489   TYR-490  10.7 10.4 -32.8 -5.6 79.9 65.7 33.9
 TYR-490   ASP-491  14.1 13.1 -27.0 19.8 139.2 137.4 -26.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-693   SER-694  8.2 9.7 6.2 -3.7 94.1 93.7 11.0
 SER-694   ALA-695  6.2 7.5 10.4 -8.6 28.1 26.0 12.1
 ALA-695   ALA-696  6.8 7.4 21.5 3.6 55.6 66.3 51.8
 ALA-696   GLY-697  5.1 5.9 -13.8 -9.7 65.8 71.5 13.1
 GLY-697   PHE-698  2.4 2.7 -0.3 -0.1 103.6 108.3 0.3
 PHE-698   PRO-699  1.8 2.3 -3.0 4.8 61.0 60.3 1.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees