Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-105   MET-106  10.9 10.9 2.7 4.4 64.9 66.4 9.4
 MET-106   THR-107  7.3 7.4 -5.6 -17.5 43.0 39.7 64.7
 THR-107   LEU-108  4.6 5.1 -17.5 3.8 119.4 113.1 -52.9
 LEU-108   GLY-109  0.8 1.9 14.3 -22.4 137.8 131.4 25.0
 GLY-109   ILE-110  2.6 2.6 12.5 5.3 63.5 58.0 38.4
 ILE-110   SER-111  6.1 5.9 4.5 1.7 74.0 71.5 -2.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-212   SER-213  4.4 4.7 11.6 -2.4 117.7 110.0 -9.5
 SER-213   LYS-214  1.6 1.7 9.7 0.6 76.7 84.0 39.6
 LYS-214   GLY-215  2.3 2.2 -27.3 26.4 39.6 43.5 -4.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-251   ARG-252  4.0 3.7 -10.3 -14.5 135.6 135.5 -78.4
 ARG-252   GLY-253  5.9 5.3 0.3 68.8 46.9 39.6 197.2
 GLY-253   ASN-254  4.9 3.6 16.5 6.7 73.9 39.3 79.2
 ASN-254   GLY-255  7.0 5.1 44.1 4.4 127.6 95.1 -84.0
 GLY-255   CYS-256  7.5 8.5 -50.8 -2.4 118.0 90.3 -9.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees