Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  7.3 6.2 25.5 -7.4 112.7 118.3 -41.1
 LEU-108   GLY-109  4.1 2.7 -19.3 32.3 135.6 137.4 21.5
 GLY-109   ILE-110  2.6 2.1 -52.8 24.9 59.7 68.4 40.1
 ILE-110   SER-111  4.8 4.5 -2.7 -9.3 60.0 68.1 22.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-209   LEU-210  11.3 10.5 5.2 6.2 103.3 112.9 -17.4
 LEU-210   ILE-211  7.8 7.3 2.1 17.5 154.7 159.3 -56.5
 ILE-211   ASP-212  7.2 7.3 -176.1 144.6 69.5 46.8 27.9
 ASP-212   SER-213  4.3 4.3 130.8 -99.9 73.4 59.8 49.5
 SER-213   LYS-214  4.4 3.6 -14.2 11.4 78.3 70.9 26.0
 LYS-214   GLY-215  3.6 3.4 26.7 -14.9 41.3 40.7 21.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-251   ARG-252  4.8 5.0 11.1 6.6 146.6 143.7 -40.1
 ARG-252   GLY-253  5.3 6.3 6.3 -94.6 127.8 130.4 166.8
 GLY-253   ASN-254  2.5 4.2 -30.6 31.5 26.7 66.5 5.0
 ASN-254   GLY-255  3.2 5.2 -60.4 -35.1 72.4 124.8 -56.2
 GLY-255   CYS-256  5.9 5.7 48.0 18.8 72.1 117.8 -11.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees