T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-102   VAL-103  6.2 5.6 13.7 14.5 38.1 40.1 50.3
 VAL-103   PHE-104  5.5 4.8 -35.6 37.2 145.2 124.4 -28.3
 PHE-104   GLN-105  6.1 5.1 -179.7 36.2 79.1 66.7 -72.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-134   LYS-135  2.6 2.4 24.0 -21.8 57.5 87.3 28.0
 LYS-135   SER-136  1.9 2.2 -144.0 -169.9 52.3 25.3 -139.3
 SER-136   ARG-137  4.1 2.3 -142.1 -15.3 29.3 73.4 324.8
 ARG-137   TRP-138  3.7 5.2 14.2 66.6 72.7 116.9 26.1
 TRP-138   TYR-139  6.4 3.5 -46.3 -23.9 149.8 123.0 -167.7
 TYR-139   ASN-140  6.9 4.8 61.3 -34.5 85.2 79.0 16.4
 ASN-140   GLN-141  10.0 7.2 1.4 28.4 111.5 130.3 -23.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees