Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-31   ASP-32  7.7 7.7 5.0 -5.4 125.6 122.4 2.1
 ASP-32   THR-33  6.1 6.2 2.3 -4.1 89.5 92.1 4.6
 THR-33   GLN-34  2.6 2.6 -26.1 33.4 116.4 109.2 58.0
 GLN-34   VAL-35  3.0 2.9 15.0 -22.6 90.1 97.7 -6.1
 VAL-35   SER-36  5.0 4.9 -0.5 3.7 157.7 158.4 8.9
 SER-36   VAL-37  6.3 6.5 -31.3 36.6 114.5 110.7 43.8
 VAL-37   SER-38  8.5 8.5 1.3 -0.3 54.3 54.0 2.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-85   ARG-86  9.7 9.6 4.2 -3.6 75.1 76.1 7.0
 ARG-86   GLU-87  9.5 9.4 3.4 -4.8 106.3 110.1 -0.8
 GLU-87   ALA-88  6.4 6.3 23.5 -21.5 60.5 58.9 -11.0
 ALA-88   ILE-89  4.5 4.7 0.1 8.5 30.2 35.7 79.2
 ILE-89   GLU-90  4.6 4.7 -6.3 4.7 76.1 71.7 -41.9
 GLU-90   GLN-91  5.6 5.5 -2.9 -5.0 79.0 76.4 24.0
 GLN-91   VAL-92  2.7 2.5 20.9 -19.8 32.1 38.9 9.8
 VAL-92   LEU-93  1.8 1.7 23.8 -18.4 62.4 57.6 37.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees