Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-104   PHE-105  10.7 10.6 3.7 -3.5 146.6 153.2 -10.9
 PHE-105   MET-106  11.8 11.3 4.4 -24.3 121.1 123.5 18.9
 MET-106   THR-107  8.5 8.0 4.6 19.3 41.1 47.0 48.9
 THR-107   LEU-108  7.3 5.8 29.1 -7.7 112.1 115.7 -47.8
 LEU-108   GLY-109  4.5 2.5 -27.5 30.8 136.4 136.4 10.9
 GLY-109   ILE-110  3.6 3.1 -47.8 26.3 61.1 68.1 34.5
 ILE-110   SER-111  5.7 5.4 -4.7 -7.2 58.5 66.4 37.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  13.8 14.0 25.1 -29.9 100.5 91.6 -19.0
 GLY-209   LEU-210  12.3 11.5 -4.5 16.6 74.8 60.9 -19.3
 LEU-210   ILE-211  8.9 8.3 5.5 -5.8 156.0 161.3 6.3
 ILE-211   ASP-212  8.3 8.6 -152.4 146.1 68.4 48.0 -45.2
 ASP-212   SER-213  5.5 5.4 128.2 -103.7 72.8 58.0 45.1
 SER-213   LYS-214  5.4 4.4 -14.4 17.4 77.1 69.0 23.2
 LYS-214   GLY-215  3.7 3.0 21.4 -3.9 40.8 42.7 41.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-251   ARG-252  4.1 4.3 15.0 -5.3 147.4 145.9 -19.1
 ARG-252   GLY-253  4.8 5.5 9.0 -90.2 125.8 130.0 153.8
 GLY-253   ASN-254  2.1 3.1 -19.9 39.5 25.0 61.6 -56.2
 ASN-254   GLY-255  2.7 4.0 -61.8 -41.6 71.1 122.9 -38.7
 GLY-255   CYS-256  5.9 5.7 53.9 12.6 71.5 111.7 -7.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees