Phosphate-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-74   VAL-75  8.6 8.6 -0.3 17.5 126.9 123.2 53.7
 VAL-75   ILE-76  5.1 5.2 -10.5 -1.6 56.7 56.7 39.0
 ILE-76   GLY-77  1.4 1.5 5.1 15.0 63.7 69.0 23.0
 GLY-77   GLY-78  3.0 2.7 -9.1 -9.1 60.5 74.5 21.1
 GLY-78   VAL-79  5.8 5.5 -5.2 -18.4 81.5 81.9 20.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-226   ALA-227  9.4 9.7 5.6 3.4 4.3 5.9 34.0
 ALA-227   ALA-228  8.3 8.3 -23.0 34.6 116.0 113.8 14.0
 ALA-228   LYS-229  7.3 7.6 -38.4 6.3 80.4 86.8 66.8
 LYS-229   GLY-230  10.9 11.1 -10.7 19.5 142.6 147.3 31.6
 GLY-230   ALA-231  12.3 12.0 -6.7 -15.4 133.0 153.0 -74.0
 ALA-231   ASP-232  10.0 10.6 9.8 41.9 88.9 75.9 37.4
 ASP-232   TRP-233  12.5 13.2 -140.3 135.4 94.7 70.7 -9.3
 TRP-233   SER-234  11.6 12.2 -22.5 -1.4 117.7 114.9 -55.0
 SER-234   LYS-235  15.1 15.6 134.0 154.2 13.1 16.7 -256.2
 LYS-235   THR-236  13.7 15.1 117.8 -20.8 80.7 69.0 132.3
 THR-236   PHE-237  10.9 11.5 139.1 145.7 140.9 129.5 213.4
 PHE-237   ALA-238  9.0 9.9 -16.2 10.6 107.1 101.6 -52.5
 ALA-238   GLN-239  6.0 6.9 0.8 -9.3 90.8 95.5 -0.2
 GLN-239   ASP-240  4.8 5.4 6.7 -11.4 89.5 102.4 -15.8
 ASP-240   LEU-241  3.4 3.3 4.3 17.2 139.2 133.0 -60.5
 LEU-241   THR-242  4.7 4.9 3.0 0.0 93.8 91.3 6.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-253   SER-254  4.8 4.6 -8.1 27.4 128.6 127.2 41.6
 SER-254   THR-255  1.6 1.6 7.2 -36.2 123.6 123.0 61.0
 THR-255   THR-256  2.4 2.4 -18.5 27.6 110.9 114.8 11.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees