Adenylate Kinase Isoenzyme-2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-138   ARG-139  1.5 1.5 7.5 -12.7 126.7 127.7 14.3
 ARG-139   ILE-140  4.1 2.5 16.6 -33.8 156.9 147.5 24.8
 ILE-140   THR-141  2.1 2.2 0.5 14.5 94.0 86.8 -6.8
 THR-141   GLY-142  3.8 5.2 0.2 2.2 76.0 76.1 0.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-172   LEU-173  19.9 20.0 -7.5 12.4 103.4 106.9 -7.4
 LEU-173   ILE-174  16.2 16.3 14.9 -20.6 90.3 90.1 -0.7
 ILE-174   ARG-175  14.1 13.9 32.0 -38.1 118.4 108.7 20.6
 ARG-175   ARG-176  11.4 10.7 -7.6 24.6 127.7 145.2 27.6
 ARG-176   SER-177  7.9 8.3 116.3 12.0 119.4 101.7 -78.6
 SER-177   ASP-178  8.6 9.0 -94.9 44.7 126.2 64.5 -48.1
 ASP-178   ASP-179  8.0 5.7 -89.9 -10.8 64.2 11.6 192.3
 ASP-179   ASN-180  7.2 5.4 -112.4 57.8 109.5 51.4 49.7
 ASN-180   LYS-181  8.0 8.6 85.3 -8.2 125.9 126.6 -83.2
 LYS-181   LYS-182  7.2 8.4 -15.9 3.8 93.5 105.1 2.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees