Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-82   ASP-83  16.4 16.4 -2.7 0.7 129.1 125.0 -27.0
 ASP-83   THR-84  13.7 13.8 -15.4 10.7 65.9 67.9 19.5
 THR-84   LYS-85  10.2 10.4 -14.4 -1.1 120.4 123.4 -28.1
 LYS-85   GLY-86  7.3 8.3 4.3 12.8 65.3 72.4 29.3
 GLY-86   PRO-87  5.1 5.2 -12.3 8.6 97.6 89.4 7.7
 PRO-87   GLU-88  1.6 1.5 52.7 1.2 36.0 36.2 124.6
 GLU-88   ILE-89  2.7 3.4 -11.9 7.3 84.3 90.5 -20.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-184   ASP-185  6.8 7.1 3.3 -36.9 29.4 33.2 -89.6
 ASP-185   LEU-186  7.7 8.1 -44.1 66.3 126.6 144.6 60.8
 LEU-186   PRO-187  4.3 5.1 16.0 -5.3 65.7 63.1 -7.6
 PRO-187   ALA-188  4.6 5.6 20.7 -13.2 113.1 112.7 -18.5
 ALA-188   VAL-189  6.4 6.7 8.8 9.4 64.4 70.3 84.8
 VAL-189   SER-190  5.5 5.3 -9.9 29.1 130.3 113.9 10.4
 SER-190   ALA-191  2.2 2.2 1.0 -10.1 34.4 21.0 -14.6
 ALA-191   LYS-192  2.2 2.5 5.4 -4.0 102.8 90.7 8.9
 LYS-192   ASP-193  5.2 6.1 2.9 -1.4 107.2 101.9 -5.4
 ASP-193   ARG-194  6.3 6.9 5.7 -1.8 36.2 33.4 17.0
 ARG-194   VAL-195  7.0 6.8 2.7 -12.7 63.4 56.5 -12.1
 VAL-195   ASP-196  8.4 8.5 22.2 -14.1 122.8 127.6 -16.2
 ASP-196   LEU-197  10.7 10.6 -0.9 1.9 93.9 93.3 0.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees