Mannose-1-Phosphate Guanylyltransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-138   GLY-139  4.2 4.4 -2.7 8.5 97.6 95.7 35.7
 GLY-139   ILE-140  2.3 2.6 -3.3 5.2 108.1 109.6 18.3
 ILE-140   VAL-141  5.1 5.4 -18.0 7.3 60.1 61.1 37.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-148   TYR-149  9.8 10.8 25.8 2.6 61.3 93.2 -49.6
 TYR-149   GLY-150  7.1 7.2 6.5 19.1 38.3 44.5 96.1
 GLY-150   TYR-151  7.0 6.2 13.5 -27.1 45.4 38.5 -58.3
 TYR-151   ILE-152  6.7 6.3 -4.2 -5.0 137.7 143.3 -49.7
 ILE-152   GLU-153  4.6 4.3 -0.1 5.3 147.5 145.8 41.5
 GLU-153   ILE-154  5.4 5.5 -0.5 -0.9 122.3 123.8 -16.2
 ILE-154   GLY-155  2.4 2.7 -5.0 3.5 157.0 153.6 -0.2
 GLY-155   GLU-156  2.5 2.7 1.5 3.8 53.9 50.7 29.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-165   ALA-166  5.0 4.7 0.2 -2.7 117.8 116.3 -5.9
 ALA-166   GLN-167  6.9 6.7 -0.3 7.3 130.2 131.1 78.8
 GLN-167   PHE-168  8.8 8.6 -4.0 14.3 156.4 155.7 13.6
 PHE-168   ARG-169  8.5 8.4 7.8 -1.4 61.7 64.7 33.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-185   PHE-186  7.7 7.5 13.2 -14.5 137.2 141.7 18.3
 PHE-186   LEU-187  6.4 6.7 -22.6 7.2 48.6 44.4 55.9
 LEU-187   TRP-188  4.4 4.6 -7.2 13.3 38.1 34.9 -25.5
 TRP-188   ASN-189  4.0 4.2 -4.7 -3.8 83.9 88.4 14.7
 ASN-189   SER-190  2.0 1.8 -8.3 4.5 29.6 29.1 18.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees