Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  7.6 7.7 -7.7 10.2 145.8 142.4 22.1
 THR-107   LEU-108  5.0 5.2 11.6 -10.4 110.9 111.2 -11.4
 LEU-108   GLY-109  1.3 1.5 16.6 6.2 43.6 40.4 85.5
 GLY-109   ILE-110  2.1 2.0 11.9 -22.6 116.7 111.5 3.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  12.3 12.4 5.9 -4.1 87.7 85.1 5.8
 GLY-209   LEU-210  9.2 9.1 6.7 -11.7 102.9 107.0 12.2
 LEU-210   ILE-211  5.8 5.9 7.4 -16.7 146.9 159.1 41.4
 ILE-211   ASP-212  6.7 6.6 43.8 -37.5 129.6 122.2 -10.6
 ASP-212   SER-213  3.5 3.1 -19.8 26.3 115.3 124.5 10.4
 SER-213   LYS-214  0.5 0.6 -20.8 36.0 86.4 93.6 26.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees