5'-Nucleotidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-327   ARG-328  11.9 12.3 -2.2 -0.5 61.2 62.0 7.0
 ARG-328   ILE-329  9.4 10.0 -0.2 2.3 112.6 113.6 -1.2
 ILE-329   LYS-330  6.6 7.2 -6.4 10.5 62.2 62.2 -1.9
 LYS-330   LEU-331  6.5 6.4 2.9 -13.0 156.3 154.3 6.0
 LEU-331   ASP-332  5.8 5.8 23.8 6.6 86.8 88.0 8.3
 ASP-332   ASP-333  3.4 4.2 18.9 -24.8 79.9 103.8 18.8
 ASP-333   TYR-334  1.9 0.6 51.7 -34.8 146.6 167.8 -9.6
 TYR-334   SER-335  3.8 1.0 38.2 -55.6 130.0 103.5 0.0
 SER-335   THR-336  0.6 4.4 20.7 43.7 87.2 55.8 16.5
 THR-336   GLN-337  3.4 4.9 -43.8 -28.3 93.3 60.9 30.8
 GLN-337   GLU-338  5.9 6.8 -20.9 -7.3 28.3 35.5 26.8
 GLU-338   LEU-339  8.6 9.0 -0.2 10.6 55.8 48.6 -2.9

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees