Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  6.0 6.1 -10.5 -4.3 44.3 40.3 41.8
 THR-107   LEU-108  3.3 4.0 -26.2 23.1 117.9 115.2 -19.4
 LEU-108   GLY-109  0.8 1.6 -25.1 7.5 41.7 48.8 44.2
 GLY-109   ILE-110  3.9 4.2 -2.0 14.2 114.1 122.0 15.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  9.3 9.5 -6.5 18.1 134.5 134.6 38.9
 ASP-212   SER-213  5.9 6.1 19.4 -22.8 118.4 109.2 -0.4
 SER-213   LYS-214  2.7 2.6 8.4 3.2 79.3 80.0 34.2
 LYS-214   GLY-215  1.1 1.1 -27.8 22.9 40.3 48.8 11.0
 GLY-215   TYR-216  4.0 4.2 -19.6 10.3 74.1 68.9 33.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees