Oligopeptide Abc Transporter, Periplasmic Oligopeptide- Binding Protein
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-259
ILE-260
13.1
13.0
4.6
-3.0
20.3
20.4
100.7
ILE-260
PRO-261
13.6
13.5
5.6
-4.4
61.0
61.0
-10.2
PRO-261
ASP-262
11.1
11.0
3.2
-3.3
84.7
84.9
29.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-429
GLY-430
4.7
4.6
1.6
-2.9
79.6
84.3
47.7
GLY-430
PRO-431
7.7
7.6
11.8
-5.8
127.6
125.7
-61.7
PRO-431
SER-432
11.3
11.2
-0.2
2.0
85.7
85.9
-131.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-437
ASN-438
7.9
7.8
-2.6
2.1
43.0
45.0
23.0
ASN-438
ILE-439
7.4
7.4
-4.6
3.7
77.8
79.7
33.3
ILE-439
TYR-440
4.0
3.9
0.0
1.0
42.6
41.8
33.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-447
LEU-448
11.6
11.6
5.5
-5.9
15.8
17.1
-72.0
LEU-448
SER-449
11.0
11.0
8.1
-8.9
58.8
59.0
-30.3
SER-449
LYS-450
11.8
11.7
9.8
-9.5
87.9
88.1
128.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-462
ARG-463
10.0
10.0
2.7
-5.5
36.0
36.1
-44.2
ARG-463
TYR-464
11.4
11.4
8.0
-5.3
34.7
35.0
60.0
TYR-464
ASP-465
9.3
9.3
6.0
-3.8
45.0
44.1
186.5
ASP-465
ASN-466
10.0
10.1
-0.5
-6.1
145.6
146.5
-145.5
ASN-466
ASP-467
7.5
7.6
-8.1
5.2
116.0
115.8
-96.1
ASP-467
GLU-468
7.3
7.6
4.1
-2.8
69.7
70.8
32.9
GLU-468
VAL-469
3.8
4.0
-4.0
1.4
43.7
46.1
21.6
VAL-469
VAL-470
2.7
2.7
-0.5
3.2
87.2
87.9
0.6
VAL-470
GLU-471
6.2
6.2
-5.9
2.1
135.5
134.8
-95.4
GLU-471
LEU-472
5.9
6.0
3.3
-2.7
102.5
98.5
143.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-488
TYR-489
6.9
6.8
2.7
4.5
141.0
143.3
-119.9
TYR-489
PHE-490
7.3
7.3
-7.5
2.8
105.6
106.0
-110.1
PHE-490
ARG-491
8.8
8.7
3.6
-1.6
67.8
66.3
174.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-509
HIS-510
8.4
8.4
6.4
-1.3
75.5
75.4
28.1
HIS-510
TRP-511
8.3
8.4
0.7
0.3
4.4
3.6
-29.4
TRP-511
TYR-512
7.2
7.1
-0.3
-0.2
119.6
121.1
98.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees