Leucyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-228   GLY-229  11.2 10.8 -13.8 7.6 82.6 79.1 13.2
 GLY-229   ALA-230  7.6 7.2 -6.2 0.2 11.1 12.6 61.7
 ALA-230   GLU-231  5.7 5.3 7.6 -2.0 99.1 98.2 9.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-411   LYS-412  3.5 3.5 8.8 -4.1 91.9 93.1 0.3
 LYS-412   GLY-413  7.0 6.9 -8.3 8.2 17.2 17.5 5.5
 GLY-413   ARG-414  9.2 9.0 8.1 -9.4 111.0 118.3 29.2
 ARG-414   VAL-415  9.5 9.3 -18.3 2.3 21.9 23.5 132.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees