Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-30   THR-31  3.4 2.6 -28.7 -8.9 52.6 50.1 81.7
 SER-30   THR-31  3.4 2.6 -28.7 -8.9 52.6 50.1 81.7
 THR-31   GLY-32  2.0 1.8 -3.8 9.0 112.8 105.5 -10.8
 GLY-32   ASP-33  3.8 4.7 -2.7 1.8 116.9 123.7 9.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-59   THR-60  7.3 7.6 26.7 14.6 52.6 41.7 108.0
 THR-60   ASP-61  5.7 5.8 -9.5 -9.0 76.2 74.2 13.6
 ASP-61   GLU-62  3.9 3.9 -5.3 2.5 103.4 97.5 1.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees