Akap9-Braf Fusion Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-482   LYS-483  10.6 10.4 19.6 -28.5 119.1 118.4 5.9
 LYS-483   MET-484  8.9 8.5 16.0 -58.2 128.8 118.0 65.8
 MET-484   LEU-485  7.0 5.9 38.8 4.7 97.5 130.8 -65.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-502   GLY-503  2.0 2.0 -4.0 -3.6 19.1 30.1 22.2
 GLY-503   VAL-504  3.7 3.9 -0.5 -4.2 51.9 45.6 8.7
 VAL-504   LEU-505  5.1 5.4 -2.0 1.7 77.9 70.0 21.4
 LEU-505   ARG-506  3.9 4.3 -14.6 -6.6 50.3 51.6 49.1
 ARG-506   LYS-507  0.7 1.2 15.5 7.9 168.3 156.4 -71.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees