Protein (Lar)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-1458   LEU-1459  5.1 5.1 1.6 -2.3 134.7 129.8 1.8
 LEU-1459   ALA-1460  3.9 3.9 0.1 4.2 90.2 89.6 29.0
 ALA-1460   THR-1461  2.6 2.6 1.6 -0.8 95.8 95.7 -51.8
 THR-1461   TYR-1462  1.3 1.5 4.2 -1.8 73.9 75.3 -18.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-1584   GLY-1585  2.0 2.1 -7.9 -1.7 81.9 85.3 35.2
 GLY-1585   HIS-1586  3.3 3.2 -18.4 23.0 145.7 139.2 70.1
 HIS-1586   THR-1587  4.7 4.6 5.8 -6.0 102.6 109.6 -25.2
 THR-1587   GLU-1588  4.9 4.8 5.8 -2.6 52.7 54.7 17.1
 GLU-1588   VAL-1589  7.6 7.6 -0.1 -1.6 65.4 66.5 -5.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees