Leishmania Major Homolog Of Programmed Cell Death 6 Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-50   ALA-51  5.0 4.8 5.5 -4.0 89.8 90.2 20.7
 ALA-51   ALA-52  7.4 7.4 5.7 -5.4 23.8 22.8 -10.2
 ALA-52   LEU-53  8.6 8.5 7.7 -12.5 56.4 56.0 -5.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-54   SER-55  5.9 6.1 4.1 -16.7 108.2 101.0 -93.9
 SER-55   ALA-56  9.2 9.7 16.2 -0.4 33.1 40.6 224.3
 ALA-56   GLY-57  12.0 12.2 -6.7 -0.3 96.6 87.0 -17.1
 GLY-57   VAL-58  11.7 11.6 6.2 4.4 110.2 127.8 -22.0
 VAL-58   PRO-59  8.8 8.9 -7.0 -2.7 100.1 104.7 -10.1
 PRO-59   PHE-60  5.3 5.5 18.8 -25.2 133.9 134.5 56.6
 PHE-60   SER-61  2.4 2.3 -3.9 5.6 122.4 124.5 27.8
 SER-61   LEU-62  3.0 3.0 -1.2 0.2 103.5 104.7 -16.2
 LEU-62   ALA-63  3.5 3.5 3.9 5.3 114.2 115.9 -84.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-97   GLY-98  4.8 5.3 12.4 -6.1 73.1 65.9 92.8
 GLY-98   PHE-99  2.7 3.0 -4.8 11.3 56.1 58.9 34.8
 PHE-99   ARG-100  4.9 5.1 -5.3 13.9 104.0 103.7 59.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees