Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  3.4 3.8 -4.7 7.3 47.8 48.1 -20.8
 LEU-109   GLY-110  1.5 2.3 6.1 25.3 60.1 55.9 77.1
 GLY-110   ILE-111  4.3 4.6 -8.2 -3.4 49.2 45.8 22.6
 ILE-111   SER-112  7.8 8.0 2.8 4.5 106.1 108.0 -10.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  6.9 7.4 -5.5 4.5 99.5 99.8 -4.8
 SER-217   LYS-218  3.5 3.8 -10.5 -12.2 89.8 81.0 21.5
 LYS-218   GLY-219  4.7 4.8 25.5 -14.1 70.2 51.7 24.7
 GLY-219   TYR-220  6.0 6.3 18.6 -2.7 61.5 68.2 22.1
 TYR-220   GLY-221  8.9 9.4 1.8 4.6 117.4 119.5 -0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-253   TRP-254  12.1 11.8 3.2 -2.7 120.5 115.6 -11.7
 TRP-254   TRP-255  9.0 8.8 9.6 -12.5 94.8 90.2 -29.3
 TRP-255   TYR-256  6.4 6.3 57.9 56.1 121.6 117.7 -230.5
 TYR-256   ASP-257  9.3 9.1 177.3 -28.1 136.0 130.2 888.6
 ASP-257   LYS-258  12.0 8.8 144.9 7.7 145.0 148.4 -673.9
 LYS-258   GLY-259  9.5 9.5 -16.4 153.2 79.2 64.8 -138.3
 GLY-259   GLU-260  7.3 9.9 -121.7 48.1 23.8 44.4 324.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees