Pyruvate Kinase, M2 Isozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-114   GLY-115  7.1 6.6 -10.2 -7.5 73.8 71.3 46.5
 GLY-115   PRO-116  3.5 3.2 21.9 -7.5 95.6 106.5 4.1
 PRO-116   GLU-117  4.2 4.7 -80.4 82.0 23.0 31.9 0.7
 GLU-117   ILE-118  6.8 6.8 -20.0 0.8 90.0 85.4 64.5
 ILE-118   ARG-119  10.1 9.9 8.8 -17.9 113.3 115.5 20.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-217   PRO-218  8.5 8.7 -1.3 -11.0 49.7 58.5 27.0
 PRO-218   ALA-219  6.6 6.5 -9.8 -2.5 112.1 109.7 -9.7
 ALA-219   VAL-220  4.2 3.6 -5.7 5.4 85.8 56.8 3.0
 VAL-220   SER-221  1.5 1.8 -45.1 6.2 78.3 64.2 70.5
 SER-221   GLU-222  4.8 5.0 0.6 10.5 154.6 150.1 -18.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees