Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  2.7 2.8 7.4 -10.4 44.9 46.0 -24.9
 LEU-109   GLY-110  1.8 1.1 5.3 -30.9 120.0 120.4 67.3
 GLY-110   ILE-111  4.8 4.5 14.4 -0.1 44.3 46.1 32.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  7.8 7.2 -2.3 8.9 83.7 81.6 -12.4
 SER-217   LYS-218  4.1 3.5 2.6 23.6 70.8 84.6 41.1
 LYS-218   GLY-219  3.8 4.0 -21.9 -0.8 55.5 73.0 38.3
 GLY-219   TYR-220  5.0 4.9 -21.6 0.0 74.9 71.1 11.3
 TYR-220   GLY-221  8.3 8.1 -10.3 3.0 124.7 120.2 3.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-253   TRP-254  11.9 11.8 -2.1 5.3 115.0 118.9 0.3
 TRP-254   TRP-255  9.1 9.0 -1.1 1.8 97.4 100.1 -37.1
 TRP-255   TYR-256  6.3 6.1 -55.2 -54.5 122.0 124.1 -302.2
 TYR-256   ASP-257  9.0 8.6 -167.4 30.6 138.7 134.2 1091.8
 ASP-257   LYS-258  8.0 11.4 -139.7 -19.8 146.0 143.2 -762.2
 LYS-258   GLY-259  9.1 9.0 18.4 -148.0 60.3 77.7 -187.9
 GLY-259   GLU-260  8.7 6.6 119.3 -52.7 45.8 12.1 320.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees