L-Lactate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-138   THR-139  7.8 8.1 -10.8 13.4 116.8 113.3 2.1
 THR-139   ASN-140  11.4 11.6 -1.1 -1.4 177.7 173.6 -12.0
 ASN-140   PRO-141  12.5 12.9 9.6 2.3 70.7 74.9 2.1
 PRO-141   VAL-142  12.0 12.6 -1.7 -2.7 71.2 74.7 15.9
 VAL-142   ASP-143  8.6 9.2 -3.7 4.8 116.4 115.6 -41.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-163   GLY-164  3.5 3.6 -7.7 5.3 164.6 169.1 -20.2
 GLY-164   THR-165  4.1 4.2 -5.8 13.4 107.6 111.5 2.2
 THR-165   ILE-166  5.8 5.5 -7.5 0.4 63.1 58.6 44.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-232   ARG-233  15.2 15.1 1.9 3.7 93.1 92.4 -14.5
 ARG-233   ARG-234  14.4 14.4 -5.8 -1.1 114.2 120.8 -12.0
 ARG-234   ALA-235  17.8 17.8 13.3 -2.7 22.8 28.2 92.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees