DNA Helicase II

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-28   ALA-29  6.3 6.9 35.5 -96.6 124.0 138.3 196.5
 ALA-29   GLY-30  4.4 3.7 -0.7 32.2 87.6 108.8 50.7
 GLY-30   ALA-31  1.2 0.2 -96.0 130.6 114.3 85.1 27.3
 ALA-31   GLY-32  4.3 4.0 78.0 -71.6 147.7 155.3 -59.7
 GLY-32   SER-33  6.3 6.4 14.7 -4.4 121.3 137.2 -37.3
 SER-33   GLY-34  5.3 4.7 -2.9 54.1 82.0 98.0 1.2
 SER-33   GLY-34  5.3 4.7 -2.9 54.1 82.0 98.0 1.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-33   GLY-34  5.3 4.7 -2.9 54.1 82.0 98.0 1.2
 SER-33   GLY-34  5.3 4.7 -2.9 54.1 82.0 98.0 1.2
 GLY-34   LYS-35  9.0 8.3 -44.4 4.5 64.8 49.8 141.1
 LYS-35   THR-36  9.1 8.8 -22.5 0.4 74.5 75.2 61.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-249   ASP-250  3.8 3.0 8.3 -2.5 89.9 85.5 16.7
 ASP-250   GLN-251  3.5 2.9 5.7 7.9 71.0 67.6 11.4
 GLN-251   SER-252  2.0 2.5 -26.2 41.5 148.1 157.9 72.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-258   ALA-259  2.7 3.6 -65.0 35.6 147.3 159.5 -124.5
 ALA-259   GLN-260  3.2 4.0 -8.1 -40.0 103.2 107.2 -62.3
 GLN-260   VAL-261  5.3 4.4 57.6 3.7 11.9 30.1 290.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-279   GLU-280  4.6 5.8 53.4 -20.3 81.5 95.4 6.5
 GLU-280   GLN-281  1.8 3.0 -38.0 9.0 49.4 60.5 65.5
 GLN-281   ASN-282  1.2 1.3 9.7 -1.7 68.0 61.2 19.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ARG-303   LEU-304  10.1 10.5 -55.0 48.6 128.8 140.9 -16.9
 LEU-304   GLY-305  10.0 11.3 8.7 6.2 28.4 26.9 65.7
 GLY-305   LYS-306  9.3 10.0 -61.6 91.9 136.5 125.0 92.7
 LYS-306   LYS-307  6.9 6.6 8.9 48.2 59.9 31.6 237.9
 LYS-307   LEU-308  6.9 5.8 134.3 171.7 72.9 89.7 -93.4
 LEU-308   TRP-309  4.6 3.3 -23.2 -10.6 28.6 40.3 157.9
 LEU-308   TRP-309  4.6 3.3 -23.2 -10.6 28.6 40.3 157.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-308   TRP-309  4.6 3.3 -23.2 -10.6 28.6 40.3 157.9
 LEU-308   TRP-309  4.6 3.3 -23.2 -10.6 28.6 40.3 157.9
 TRP-309   THR-310  4.6 4.1 38.7 -62.2 112.5 112.3 92.4
 THR-310   ASP-311  5.3 4.5 -31.2 57.0 14.5 19.0 -146.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-377   GLY-378  21.2 21.9 56.4 -45.4 162.4 149.8 -45.2
 GLY-378   GLY-379  21.1 21.4 -161.7 139.5 73.6 64.8 82.4
 GLY-379   MET-380  20.3 21.2 9.1 -157.6 107.1 138.5 486.2
 MET-380   ARG-381  23.0 22.5 -22.2 -12.7 126.6 50.8 -84.9
 ARG-381   PHE-382  23.7 23.3 -140.8 -65.4 55.3 80.1 -203.2
 PHE-382   PHE-383  27.0 27.0 40.7 -34.8 150.7 150.4 -46.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLN-518   PHE-519  36.9 37.7 25.0 -46.9 85.1 84.7 -11.6
 MET-529   PRO-530  36.6 33.9 -81.2 13.3 64.0 62.5 170.5
 PRO-530   LEU-531  36.3 34.5 -38.0 34.2 120.0 102.6 33.5
 LEU-531   GLN-532  34.6 32.3 16.7 -28.2 85.2 106.6 12.1
 GLN-532   ALA-533  31.9 29.1 -5.1 -5.2 29.8 9.6 46.0
 ALA-533   PHE-534  31.3 30.1 25.7 -5.0 97.4 118.9 -44.1
 PHE-534   LEU-535  31.0 30.9 8.6 -10.4 54.2 99.8 -17.0
 LEU-535   SER-536  28.9 27.3 -7.0 12.5 73.2 43.2 -24.3
 SER-536   HIS-537  26.4 26.0 0.5 7.1 145.5 154.6 -40.5
 HIS-537   ALA-538  26.7 28.2 -15.3 8.5 105.6 78.1 7.2
 ALA-538   ALA-539  26.2 26.8 6.1 10.0 74.0 103.7 8.4
 ALA-539   LEU-540  22.8 23.1 9.9 4.2 137.0 167.2 -57.0
 LEU-540   GLU-541  21.3 23.7 -75.3 138.4 36.8 60.1 -158.4
 GLU-541   ALA-542  21.7 26.0 -146.3 33.7 101.8 94.2 -138.6
 ALA-542   GLY-543  23.3 23.6 71.1 -176.3 146.6 138.6 516.8
 GLY-543   GLU-544  23.4 21.7 -36.2 -89.8 84.1 33.2 316.2
 THR-549   TRP-550  33.2 30.0 -55.5 -25.3 48.3 42.8 338.8
 TRP-550   GLN-551  30.8 29.8 93.2 -101.8 108.2 98.9 -72.1
 GLN-551   ASP-552  33.0 32.2 6.9 -7.7 88.6 91.4 -35.4
 ASP-552   ALA-553  30.2 30.2 -15.6 12.7 132.1 138.0 -4.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees