Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  7.2 6.2 18.1 -9.3 110.5 115.0 -14.7
 LEU-108   GLY-109  4.0 2.8 -5.3 20.0 137.7 136.9 25.6
 GLY-109   ILE-110  2.4 1.9 -48.6 27.7 61.5 67.5 26.9
 ILE-110   SER-111  4.8 4.5 -1.4 -8.9 61.4 67.0 25.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  12.8 12.8 23.3 -22.0 98.9 93.9 -33.9
 GLY-209   LEU-210  11.2 10.3 2.4 16.2 102.5 110.4 -20.6
 LEU-210   ILE-211  7.7 7.0 0.8 16.0 156.4 154.9 -41.3
 ILE-211   ASP-212  7.0 7.2 -179.7 151.0 71.3 43.8 6.3
 ASP-212   SER-213  4.0 4.1 133.8 -90.9 71.3 60.6 76.4
 SER-213   LYS-214  4.2 3.0 -4.7 12.1 80.0 76.1 8.5
 LYS-214   GLY-215  3.6 3.1 11.5 -0.2 39.1 41.5 23.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees