Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  3.5 3.6 3.0 -6.9 49.0 52.0 -16.7
 LEU-109   GLY-110  0.9 0.1 9.6 -32.5 126.0 126.0 80.5
 GLY-110   ILE-111  3.8 3.6 10.6 -0.4 51.7 51.9 18.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  9.6 9.1 3.6 -4.4 33.5 35.9 5.5
 ASP-216   SER-217  6.5 6.1 2.2 9.2 105.2 104.2 -15.9
 SER-217   LYS-218  2.9 2.4 1.6 25.9 64.5 78.8 65.4
 LYS-218   GLY-219  1.8 2.3 -22.5 0.6 52.9 66.5 51.0
 GLY-219   TYR-220  4.5 4.6 -15.2 -2.5 82.6 77.3 -11.5
 TYR-220   GLY-221  7.9 7.9 -10.4 0.6 119.2 115.8 1.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees