Glutamate Dehydrogenase, Nad-Specific Glutamate Dehydrogenase, Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-212   GLY-213  6.3 6.6 13.8 -11.6 115.8 119.3 -3.8
 GLY-213   LEU-214  3.7 4.1 0.0 -2.2 111.1 111.7 -21.1
 LEU-214   VAL-215  2.9 3.0 -16.7 29.4 138.5 133.6 69.3
 VAL-215   TYR-216  1.4 1.5 -10.3 5.3 73.3 67.6 44.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-245   ALA-246  10.3 10.3 5.6 -9.8 95.3 93.3 53.8
 ALA-246   ILE-247  7.0 7.1 -8.6 16.5 14.2 12.6 -52.4
 ILE-247   GLU-248  7.7 7.9 -7.2 6.9 76.9 82.2 13.8
 GLU-248   LYS-249  9.1 9.2 1.1 -12.1 80.4 82.9 48.2
 LYS-249   ALA-250  6.6 6.7 12.8 -4.6 128.7 125.6 -16.6
 ALA-250   MET-251  3.6 3.7 5.3 -2.2 152.8 149.8 -50.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-370   ALA-371  4.0 4.4 19.0 -16.0 140.5 142.9 -64.2
 ALA-371   ASN-372  3.6 3.9 -9.4 9.4 88.6 88.4 24.4
 ASN-372   ALA-373  5.5 5.7 11.3 2.1 41.2 38.4 130.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 HIS-402   HIS-403  8.1 8.0 0.0 0.5 60.2 60.3 73.2
 HIS-403   ILE-404  9.6 9.5 7.3 -3.1 136.3 135.9 -26.5
 ILE-404   MET-405  7.1 6.9 -10.6 2.1 108.7 111.0 4.5
 MET-405   THR-406  4.2 4.0 -7.2 8.7 99.9 100.8 -9.0
 THR-406   ASP-407  7.1 6.7 -11.1 6.9 31.6 33.5 53.7
 ASP-407   ILE-408  8.0 7.9 15.3 -13.6 108.0 110.0 -43.0
 ILE-408   HIS-409  5.0 4.8 -3.8 9.1 117.1 116.6 10.3
 HIS-409   ASP-410  6.9 6.6 -5.3 3.0 68.3 64.8 -34.8
 ASP-410   GLY-411  10.3 9.9 -4.6 -3.6 26.1 27.7 86.8
 GLY-411   SER-412  9.5 9.7 12.3 -12.7 92.0 91.4 38.6
 GLY-411   SER-412  9.5 9.7 12.3 -12.7 92.0 91.4 38.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-411   SER-412  9.5 9.7 12.3 -12.7 92.0 91.4 38.6
 GLY-411   SER-412  9.5 9.7 12.3 -12.7 92.0 91.4 38.6
 SER-412   ALA-413  9.1 9.0 31.0 -38.1 71.8 64.2 -87.1
 ALA-413   ALA-414  12.2 12.2 -17.6 30.9 53.2 54.0 -174.8
 ALA-414   ALA-415  13.9 13.9 -82.4 16.4 39.2 36.7 867.3
 ALA-415   ALA-416  13.3 14.2 138.4 -135.6 77.7 82.3 0.2
 ALA-416   GLU-417  15.2 13.9 27.4 -4.8 83.9 57.4 100.0
 GLU-417   ARG-418  17.6 17.3 -31.9 -110.7 31.0 50.6 -1219.7
 ARG-418   TYR-419  18.3 18.8 5.7 168.7 109.2 134.2 984.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASN-430   ILE-431  9.9 9.5 -10.0 8.0 136.8 132.6 -1.0
 ILE-431   VAL-432  10.6 10.8 13.2 -5.3 73.9 79.3 72.5
 VAL-432   GLY-433  8.1 8.2 -13.3 11.0 118.7 122.6 -37.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees