Thymidine Phosphorylase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-63   ARG-64  4.4 4.9 -5.4 8.7 99.0 101.3 -5.5
 ARG-64   ASP-65  3.2 3.6 5.7 -5.7 149.7 148.0 -23.3
 ASP-65   SER-66  2.6 2.7 -4.7 -7.0 43.2 39.4 109.1
 SER-66   GLY-67  4.5 4.8 23.6 -30.8 106.6 104.2 4.9
 GLY-67   THR-68  7.3 7.7 -19.4 38.6 96.8 110.9 83.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-161   PRO-162  8.4 8.6 -25.2 4.7 119.1 119.8 -81.7
 PRO-162   ALA-163  10.4 10.7 14.8 -10.6 88.7 85.9 45.0
 ALA-163   ASP-164  9.6 9.6 9.2 -8.4 137.2 141.3 -5.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-187   LEU-188  8.5 8.6 0.2 -7.0 96.5 103.5 20.5
 LEU-188   ALA-189  4.9 5.0 -1.2 -3.9 26.4 23.5 71.1
 ALA-189   LYS-190  5.2 5.4 9.2 -14.8 94.2 88.6 -24.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees