Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-29   GLY-30  4.4 3.7 -10.1 38.3 51.3 56.4 -30.5
 GLY-30   PHE-31  4.0 3.3 8.4 -16.7 160.3 147.3 1.6
 PHE-31   SER-32  4.8 5.4 -31.1 3.9 67.8 36.4 54.2
 SER-32   VAL-33  2.7 3.8 -16.7 -25.0 68.7 60.7 37.5
 VAL-33   SER-34  5.9 6.6 -5.8 -9.2 6.7 9.4 33.0
 SER-34   SER-35  6.3 6.5 -7.1 19.7 60.4 59.9 -6.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-83   SER-84  6.6 6.2 -18.3 14.5 47.9 40.7 13.0
 SER-84   VAL-85  4.5 4.1 -18.9 8.0 50.8 56.1 16.6
 VAL-85   LYS-86  2.6 2.2 11.2 -24.8 135.9 124.0 34.7
 LYS-86   GLN-87  6.0 5.8 6.2 -9.8 132.8 136.2 7.9
 GLN-87   VAL-88  6.1 6.4 19.0 -21.4 141.5 143.1 5.6
 VAL-88   SER-89  2.9 3.2 -11.7 15.6 43.3 59.2 6.7
 SER-89   LYS-90  4.7 4.4 -26.1 18.1 67.7 61.4 -4.6
 LYS-90   SER-91  7.6 7.5 -14.7 19.8 36.8 30.4 -4.8
 SER-91   GLY-92  6.1 6.0 -4.0 -5.7 31.8 39.5 23.1
 GLY-92   LYS-93  4.3 4.8 -0.3 12.0 91.7 84.5 -4.9
 LYS-93   THR-94  1.0 1.4 -9.8 19.9 128.2 127.7 3.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees