Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  8.5 8.1 18.8 -10.1 107.4 114.0 -2.0
 LEU-108   GLY-109  5.0 4.5 -14.4 24.1 141.3 137.4 26.4
 GLY-109   ILE-110  2.3 2.1 -42.3 31.0 66.1 70.4 11.1
 ILE-110   SER-111  3.1 2.7 -2.0 -10.7 59.1 64.6 38.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-207   GLY-208  11.1 11.2 -13.6 -17.9 25.2 35.9 121.6
 GLY-208   GLY-209  11.5 11.6 23.5 -32.0 95.8 89.6 -13.3
 GLY-209   LEU-210  10.4 9.3 14.0 3.3 106.2 121.3 -51.7
 LEU-210   ILE-211  7.1 6.3 -0.2 5.5 19.0 18.8 -0.2
 ILE-211   ASP-212  6.0 6.3 -155.3 139.0 70.5 45.3 -32.6
 ASP-212   SER-213  3.2 3.8 128.4 -95.1 68.1 55.5 83.0
 SER-213   LYS-214  5.1 4.6 7.3 -2.0 101.4 105.5 19.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-251   ARG-252  4.9 5.3 -2.6 -5.8 35.3 38.4 19.5
 ARG-252   GLY-253  4.6 5.1 -5.1 -35.2 58.3 53.1 90.6
 GLY-253   ASN-254  1.5 1.9 -48.8 -1.7 20.3 48.7 133.9
 ASN-254   GLY-255  1.5 2.4 -27.2 140.3 72.5 72.0 -146.2
 GLY-255   CYS-256  4.1 3.3 -166.8 30.8 113.1 113.0 -220.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees