Citrate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-55   SER-56  5.7 6.4 9.4 -9.9 119.7 117.6 -2.7
 SER-56   VAL-57  2.5 2.9 31.9 -21.3 66.2 64.6 55.8
 VAL-57   LEU-58  2.5 2.7 6.1 -25.0 126.8 127.6 62.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-63   ILE-64  7.3 6.9 -23.1 29.1 60.9 65.8 70.2
 ILE-64   ARG-65  3.6 3.1 6.4 -18.4 104.9 110.7 45.5
 ARG-65   PHE-66  2.9 2.5 -5.5 9.0 82.8 80.7 71.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-272   LEU-273  18.9 18.1 5.3 -11.2 51.7 55.1 15.3
 LEU-273   HIS-274  18.2 17.5 -5.6 14.6 107.7 116.1 7.2
 HIS-274   GLY-275  15.1 14.6 -83.2 26.5 43.7 41.6 191.2
 GLY-275   LEU-276  13.6 12.2 3.0 32.6 139.6 162.6 -103.4
 LEU-276   ALA-277  14.1 14.4 -47.3 59.6 83.4 67.1 -99.8
 ALA-277   ASN-278  12.5 13.2 -17.1 34.6 64.6 50.1 -28.3
 ASN-278   GLN-279  9.2 10.1 -25.2 7.2 16.9 19.9 69.1
 GLN-279   GLU-280  11.3 12.1 4.1 -9.5 94.4 107.9 -3.2
 GLU-280   VAL-281  14.0 14.6 -3.5 22.4 69.2 72.9 -10.9
 VAL-281   LEU-282  12.4 12.5 -14.3 -3.6 22.7 9.4 99.0
 LEU-282   VAL-283  10.3 11.2 -3.6 12.1 45.8 50.3 -92.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-331   CYS-332  9.2 9.0 -9.2 5.9 105.7 110.0 24.3
 CYS-332   GLN-333  7.2 6.7 -2.9 20.8 163.1 159.4 17.5
 GLN-333   ARG-334  5.6 5.0 -23.6 13.0 128.5 133.7 -29.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-338   LYS-339  12.2 11.6 8.8 -12.1 113.6 107.1 -10.3
 LYS-339   HIS-340  12.9 11.9 0.7 2.4 149.7 145.9 -8.7
 HIS-340   LEU-341  10.5 9.6 -1.5 -3.5 42.2 36.0 53.2
 LEU-341   PRO-342  8.7 7.9 -6.9 -5.6 89.0 91.9 -14.7
 LEU-341   PRO-342  8.7 7.9 -6.9 -5.6 89.0 91.9 -14.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-341   PRO-342  8.7 7.9 -6.9 -5.6 89.0 91.9 -14.7
 LEU-341   PRO-342  8.7 7.9 -6.9 -5.6 89.0 91.9 -14.7
 PRO-342   HIS-343  12.0 11.0 12.9 9.1 45.6 39.5 128.1
 HIS-343   ASP-344  12.0 11.0 -49.6 32.7 109.1 104.3 -69.5
 ASP-344   PRO-345  8.7 8.0 -11.3 2.9 91.4 82.4 -26.2
 PRO-345   MET-346  10.0 9.8 0.5 18.7 143.7 139.5 -52.2
 MET-346   PHE-347  8.9 8.8 -4.3 0.7 20.4 27.3 14.5
 PHE-347   LYS-348  8.8 8.9 -5.1 -12.8 91.4 87.0 60.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-373   VAL-374  9.3 9.7 -26.2 37.3 106.8 127.5 -57.5
 VAL-374   ASP-375  5.8 6.3 -8.4 8.0 153.8 154.3 15.7
 ASP-375   ALA-376  7.3 8.2 0.9 2.8 31.2 41.7 -10.5
 ALA-376   HIS-377  8.9 9.7 15.6 -38.3 59.7 48.1 -41.0
 HIS-377   SER-378  6.2 6.6 40.4 -28.2 61.5 70.7 -22.1
 SER-378   GLY-379  3.0 4.1 5.1 -4.0 25.1 19.4 50.7
 GLY-379   VAL-380  4.8 5.3 -3.3 12.2 146.3 139.5 8.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees