Ribosome Recycling Factor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-28   THR-29  10.0 6.8 9.3 24.8 127.4 152.7 -28.8
 THR-29   GLY-30  6.8 5.1 169.4 -78.9 89.2 98.7 -9.4
 GLY-30   LYS-31  3.1 1.4 -151.6 17.9 152.0 111.6 -110.4
 LYS-31   PRO-32  2.0 3.0 -169.8 14.5 131.1 168.0 230.5
 PRO-32   SER-33  4.0 2.5 -8.0 -12.5 128.5 132.5 -5.7
 SER-33   PRO-34  6.0 4.2 28.2 -9.3 63.8 52.1 12.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-100   VAL-101  11.0 11.5 -13.7 25.3 110.2 123.5 9.7
 VAL-101   PHE-102  9.2 9.8 -2.7 1.1 138.2 120.8 -11.1
 PHE-102   PRO-103  6.3 7.1 59.8 -10.1 50.0 27.1 50.7
 PRO-103   SER-104  6.7 6.1 -8.7 -17.0 117.1 87.7 -5.5
 SER-104   PRO-105  4.3 2.5 38.3 5.8 48.0 74.6 26.8
 PRO-105   THR-106  2.7 2.3 4.4 21.0 15.9 3.8 26.4
 THR-106   THR-107  3.2 3.6 7.0 3.2 71.7 62.7 8.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees