Pol Polyprotein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-241   GLN-242  7.7 9.8 -69.1 32.7 150.4 161.1 -116.3
 GLN-242   PRO-243  7.9 8.3 -177.5 -30.4 114.2 132.7 272.8
 PRO-243   ILE-244  10.2 10.8 -26.3 -47.1 89.0 68.9 80.2
 ILE-244   VAL-245  13.8 13.9 -51.4 -0.7 146.0 142.3 -118.3
 VAL-245   LEU-246  15.6 15.6 -12.6 -10.5 83.0 96.6 8.9
 LEU-246   PRO-247  19.4 19.3 -40.1 3.0 150.7 155.0 -109.1
 PRO-247   GLU-248  21.5 20.6 20.2 1.0 57.9 83.4 21.3
 GLU-248   LYS-249  22.7 23.4 4.8 44.5 55.6 46.2 107.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-311   GLU-312  16.9 16.6 -87.2 57.8 118.3 104.5 -7.1
 GLU-312   PRO-313  16.1 15.1 43.0 -1.0 56.2 32.9 104.9
 PRO-313   VAL-314  12.5 12.2 -7.3 -18.2 151.5 143.3 -75.9
 VAL-314   HIS-315  11.6 13.0 -5.0 35.3 105.9 130.8 31.1
 HIS-315   GLY-316  9.0 10.4 -12.8 78.4 151.3 165.5 183.9
 GLY-316   VAL-317  8.9 10.0 -38.9 16.8 113.5 121.0 -27.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees