Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-534   THR-535  6.3 6.5 -4.6 0.2 45.3 39.5 20.1
 THR-535   LEU-536  3.8 4.7 -12.0 9.7 118.1 116.6 20.7
 LEU-536   GLY-537  1.2 2.3 9.4 -20.8 137.2 134.3 36.5
 GLY-537   ILE-538  3.8 4.1 -4.3 5.4 113.1 120.5 -17.4
 ILE-538   SER-539  7.0 7.0 10.4 -6.1 67.6 67.2 24.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-757   LEU-758  11.7 12.1 1.8 -2.4 64.1 68.1 -14.2
 LEU-758   ILE-759  8.6 8.9 -2.2 11.1 152.9 148.3 57.2
 ILE-759   ASP-760  9.3 9.4 -23.0 12.5 130.3 140.2 -35.2
 ASP-760   SER-761  5.8 6.1 10.6 -8.3 119.6 111.3 2.0
 SER-761   LYS-762  3.1 3.4 14.1 -19.3 72.9 77.2 25.8
 LYS-762   GLY-763  0.8 1.2 -12.6 -3.1 49.1 43.3 50.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees