Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-87   ALA-88  10.8 10.9 -5.0 -1.4 70.5 70.2 56.3
 ALA-88   PRO-89  8.4 8.5 6.7 -5.0 54.0 53.5 12.3
 PRO-89   LEU-90  5.5 5.9 -2.4 -1.8 153.1 153.4 -57.6
 LEU-90   THR-91  7.1 7.4 5.6 -5.6 46.0 45.9 -2.4
 THR-91   ILE-92  4.8 5.2 1.2 1.4 36.2 37.0 46.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-104   PRO-105  8.9 9.1 -4.2 1.3 43.6 42.8 2.1
 PRO-105   PHE-106  5.8 5.9 2.5 -7.8 158.5 158.1 59.2
 PHE-106   MET-107  6.0 6.0 0.3 -4.0 112.6 112.7 -10.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-219   TYR-220  1.1 0.8 1.9 -4.3 76.4 75.8 -15.2
 TYR-220   GLY-221  2.8 3.1 2.6 -1.4 95.4 94.2 50.0
 GLY-221   ILE-222  6.4 6.6 6.0 -2.9 65.3 65.2 53.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-250   LYS-251  5.1 5.1 -0.1 -1.8 103.4 102.9 25.4
 LYS-251   ASN-252  3.8 3.6 4.9 -8.5 139.1 135.4 77.8
 ASN-252   LYS-253  6.1 5.9 4.9 2.7 141.9 143.1 -91.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees