Uracil-Dna Glycosylase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-156
CYS-157
8.8
8.6
-14.1
13.6
85.9
82.8
61.3
CYS-157
PHE-158
9.6
9.5
-16.6
2.3
40.6
37.7
120.5
PHE-158
SER-159
10.0
10.2
10.9
1.4
148.8
146.2
-106.6
SER-159
VAL-160
8.4
8.4
2.4
-4.2
122.4
124.2
-23.0
VAL-160
GLN-161
10.4
10.3
-8.5
9.8
49.3
54.2
-62.7
GLN-161
ARG-162
9.9
9.8
-1.4
-5.5
20.0
14.7
77.1
ARG-162
PRO-163
9.7
9.2
-1.9
-1.1
76.4
72.4
44.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-193
GLY-194
4.3
4.4
5.7
3.9
97.8
94.8
-30.9
GLY-194
TRP-195
3.1
2.9
-8.1
2.7
31.0
30.5
29.6
TRP-195
ALA-196
1.5
1.3
-5.0
5.1
42.1
42.0
23.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-233
ASN-234
3.0
2.8
-2.9
-2.4
127.4
127.8
-41.9
ASN-234
GLN-235
0.9
0.7
-3.3
14.7
137.4
138.6
66.4
GLN-235
ASN-236
2.2
2.2
-5.8
0.5
76.9
76.8
24.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-244
TRP-245
11.3
11.1
4.8
5.9
57.6
51.9
54.1
TRP-245
GLY-246
13.8
13.4
-5.1
1.3
83.0
82.5
22.0
GLY-246
SER-247
17.0
16.8
-9.6
7.6
19.2
15.5
45.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-248
ALA-249
16.9
17.2
5.1
1.3
75.6
78.4
38.9
ALA-249
GLN-250
13.3
13.5
1.7
2.7
37.7
36.5
33.9
GLN-250
LYS-251
14.3
14.4
22.7
3.8
28.9
24.7
229.7
LYS-251
LYS-252
15.3
15.0
24.6
-14.2
78.8
64.1
51.8
LYS-252
GLY-253
12.5
11.2
16.3
43.8
73.5
63.9
158.8
GLY-253
SER-254
10.0
11.2
-50.5
3.3
144.0
167.7
-436.0
SER-254
ALA-255
11.8
11.4
-6.1
11.7
138.9
104.8
-4.2
ALA-255
ILE-256
8.9
8.2
-9.1
-36.5
80.2
81.3
95.0
ILE-256
ASP-257
6.5
6.3
-0.7
1.1
128.0
129.0
-15.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees