Rna-Directed RNA Polymerase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-10   ILE-11  11.1 10.9 -10.3 -11.0 45.1 38.8 109.8
 ILE-11   THR-12  10.6 10.4 -20.5 38.3 117.7 108.9 43.0
 THR-12   PRO-13  11.0 10.7 7.9 -15.3 118.0 134.0 42.5
 PRO-13   CYS-14  11.5 10.8 9.6 25.3 76.0 87.9 59.7
 CYS-14   SER-15  15.3 14.2 -116.4 117.3 100.7 116.3 -60.7
 SER-15   PRO-16  15.2 14.6 -43.7 14.5 102.0 125.4 -57.4
 PRO-16   GLU-17  13.3 12.8 -22.7 63.1 34.4 65.3 -204.4
 GLU-17   GLU-18  11.1 10.4 4.6 -16.4 77.2 56.2 -120.1
 GLU-18   GLU-19  11.8 12.7 4.6 25.5 125.2 88.9 -56.5
 GLU-19   LYS-20  9.6 12.8 165.6 52.2 111.8 121.0 436.2
 LYS-20   LEU-21  12.9 15.2 21.3 -43.4 112.3 42.8 -81.2
 LEU-21   PRO-22  16.0 18.6 42.6 -1.1 45.8 95.5 243.4
 PRO-22   ILE-23  18.8 20.9 -161.5 -57.0 72.0 48.5 -594.7
 ILE-23   ASN-24  22.1 23.5 -14.3 70.1 85.6 40.4 -164.0
 ASN-24   PRO-25  25.0 22.7 -43.7 -14.0 44.2 58.7 294.0
 PRO-25   LEU-26  28.2 26.3 3.6 -4.8 162.6 169.8 11.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-42   LYS-43  5.8 4.9 -4.5 -2.4 60.1 55.8 56.1
 LYS-43   SER-44  2.6 2.8 5.2 25.4 56.2 49.0 97.4
 SER-44   ALA-45  1.6 1.9 -7.3 -9.4 120.8 125.3 -63.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-138   MET-139  14.2 14.3 -6.7 2.5 123.4 121.1 -4.9
 MET-139   ALA-140  11.9 11.8 14.2 -16.7 110.8 114.2 27.1
 ALA-140   LYS-141  8.3 8.3 -8.7 0.5 68.9 67.2 88.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-155   PRO-156  3.7 3.8 12.4 -20.6 133.7 135.2 34.1
 PRO-156   ALA-157  0.7 1.3 11.8 -15.4 63.8 62.6 -50.9
 ALA-157   ARG-158  3.1 2.7 4.9 -4.0 46.6 49.8 74.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-189   SER-190  9.8 9.4 -10.3 -11.2 140.2 143.9 -141.1
 SER-190   TYR-191  7.9 7.5 6.8 11.2 24.4 23.6 130.6
 TYR-191   GLY-192  10.2 9.9 12.7 -5.5 74.5 72.1 4.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-196   PRO-197  14.9 14.3 -21.1 18.5 92.8 98.7 22.6
 PRO-197   ALA-198  13.5 12.7 3.6 4.3 25.3 26.3 61.7
 ALA-198   GLN-199  14.9 14.6 -0.5 -19.3 130.2 133.5 -112.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-210   LYS-211  3.4 3.7 12.2 -7.8 89.1 89.6 8.5
 LYS-211   LYS-212  5.3 5.3 -2.2 7.9 60.0 58.1 -29.1
 LYS-212   ASP-213  8.3 8.3 -2.4 -7.2 130.9 128.7 10.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-214   MET-215  8.4 8.7 17.6 -20.0 143.7 145.6 -3.8
 MET-215   GLY-216  9.2 9.4 2.6 -5.5 122.6 129.6 -24.8
 GLY-216   PHE-217  6.7 7.3 1.8 -9.0 158.5 156.9 29.4
 PHE-217   SER-218  6.7 7.4 8.3 -23.1 120.0 120.4 4.1
 SER-218   TYR-219  4.5 5.1 1.0 -7.5 121.6 133.6 -14.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-312   MET-313  3.3 3.2 10.7 -7.4 9.2 7.2 34.5
 MET-313   LEU-314  4.0 3.8 10.2 -19.3 70.9 67.5 -22.7
 LEU-314   VAL-315  4.0 3.7 12.5 -5.8 23.8 20.7 33.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-320   VAL-321  3.4 2.9 6.9 4.4 61.9 58.2 82.6
 VAL-321   VAL-322  1.7 1.9 1.9 6.1 31.7 29.4 69.6
 VAL-322   ILE-323  4.0 3.9 14.2 -10.4 54.3 53.0 -21.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-324   GLU-325  6.3 6.7 1.1 -8.3 122.8 132.1 85.6
 GLU-325   SER-326  8.7 8.9 4.7 -1.8 62.5 66.3 39.4
 SER-326   GLN-327  11.9 12.3 -0.1 1.1 53.8 53.3 -30.2
 GLN-327   GLY-328  15.1 15.2 17.3 -24.6 79.3 78.1 -14.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-349   PRO-350  13.6 13.1 16.6 -20.8 82.2 88.7 15.1
 PRO-350   GLY-351  11.1 10.4 17.3 4.3 23.9 27.1 155.8
 GLY-351   ASP-352  9.5 9.5 15.7 -25.9 105.0 105.2 -14.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-361   LEU-362  11.5 12.6 -1.0 -17.6 35.5 40.7 129.0
 LEU-362   ILE-363  10.9 11.8 22.7 -23.7 106.2 101.3 4.7
 ILE-363   THR-364  7.2 8.0 -37.2 30.6 51.6 49.6 6.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-365   CYS-366  3.9 3.6 42.0 19.6 45.2 92.1 224.4
 CYS-366   SER-367  4.8 4.5 -20.8 0.6 115.8 134.6 -23.8
 SER-367   SER-368  6.3 5.4 4.6 -24.0 122.3 106.4 52.3
 SER-368   ASN-369  8.7 8.3 21.9 -11.1 141.5 143.1 -9.8
 ASN-369   VAL-370  9.9 9.5 3.8 -11.5 130.6 131.4 41.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees