Orotidine 5'-Phosphate Decarboxylase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-26   MET-27  9.6 9.4 9.3 -1.3 118.3 114.7 -15.3
 MET-27   ILE-28  6.2 5.9 -10.7 5.0 60.2 59.1 40.2
 ILE-28   LYS-29  3.8 3.8 -5.6 4.3 105.7 105.2 -0.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-41   ILE-42  6.1 6.3 2.9 -0.8 100.5 99.9 26.7
 ILE-42   ILE-43  2.5 2.7 -5.8 -1.8 38.0 41.2 61.2
 ILE-43   ARG-44  3.6 4.0 5.5 -7.4 74.5 70.5 -31.9
 ARG-44   ARG-45  6.3 6.6 4.0 4.4 63.1 60.8 40.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-48   GLU-49  9.2 9.3 -5.3 5.6 78.3 80.2 20.2
 GLU-49   THR-50  8.8 8.7 -11.2 2.5 140.9 138.2 -47.5
 THR-50   GLY-51  9.8 9.6 1.5 -10.8 52.2 48.5 -56.4
 GLY-51   VAL-52  11.3 11.0 5.6 12.6 17.5 19.7 177.4
 VAL-52   GLU-53  9.2 8.9 -19.6 8.0 97.4 108.8 -29.3
 GLU-53   ILE-54  7.3 7.4 -8.1 -0.2 81.2 84.2 4.3
 ILE-54   ILE-55  4.0 4.1 2.0 -2.6 50.1 47.3 -15.8
 ILE-55   ALA-56  2.6 2.7 -0.7 -0.2 59.5 59.1 3.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-156   ILE-157  9.2 9.4 -15.2 -3.1 136.8 133.8 -76.8
 ILE-157   LYS-158  6.3 6.5 -6.1 7.4 102.3 99.8 15.4
 LYS-158   ILE-159  4.2 4.5 0.7 -0.6 86.6 88.8 16.3
 ILE-159   LEU-160  1.3 1.7 1.7 3.2 36.9 37.9 33.2
 LEU-160   ALA-161  2.4 2.7 -3.0 -0.4 81.7 78.6 -1.7
 ALA-161   PRO-162  5.9 6.0 2.2 -1.3 38.8 44.2 8.9
 PRO-162   GLY-163  8.0 8.4 -0.6 -24.3 65.3 62.1 17.7
 GLY-163   ILE-164  11.8 12.2 8.9 25.6 98.0 126.0 -147.1
 ILE-164   GLY-165  12.8 13.3 13.2 -165.1 39.1 74.3 -697.6
 GLY-165   ALA-166  16.0 17.1 -100.3 -29.7 100.1 120.7 2005.6
 ALA-166   GLN-167  17.1 19.3 34.1 16.4 139.4 121.0 -383.7
 GLN-167   GLY-168  16.6 21.5 147.7 -164.2 145.4 96.9 65.5
 GLY-168   GLY-169  18.0 21.9 151.2 167.8 128.1 151.6 197.9
 GLY-169   LYS-170  15.1 19.6 -170.1 41.9 102.3 85.4 -916.8
 LYS-170   ALA-171  15.8 16.8 -176.4 -6.9 87.7 107.2 -25.1
 ALA-171   LYS-172  13.8 14.6 -3.5 -3.1 34.4 50.9 60.0
 LYS-172   ASP-173  15.4 15.5 7.2 -3.6 142.7 148.7 -24.4
 ASP-173   ALA-174  14.1 14.5 4.2 3.3 87.9 85.2 -32.4
 ALA-174   VAL-175  10.6 11.1 0.0 -0.5 101.1 95.4 -8.2
 VAL-175   LYS-176  10.7 10.6 -0.1 -2.6 12.5 17.6 37.8
 LYS-176   ALA-177  12.0 12.0 10.6 -6.9 122.4 126.1 -41.2
 ALA-177   GLY-178  9.1 9.3 -3.9 19.8 96.8 99.0 24.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees