Nika Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-215   TYR-216  10.7 10.5 4.8 -18.4 134.4 142.3 52.1
 TYR-216   GLY-217  8.9 8.8 -9.8 7.9 60.7 62.2 7.2
 GLY-217   THR-218  6.5 7.1 -14.5 -0.4 88.1 83.4 -16.6
 THR-218   GLU-219  3.7 4.7 145.3 -69.4 56.2 69.6 111.1
 GLU-219   GLY-220  5.3 7.4 68.5 137.0 78.8 11.6 -383.9
 GLY-220   PRO-221  8.4 6.9 144.7 5.4 35.8 72.0 307.3
 PRO-221   ILE-222  9.2 8.7 -9.0 -2.5 148.6 177.6 -54.5
 ILE-222   SER-223  6.3 7.4 41.9 10.2 79.6 85.9 34.7
 SER-223   PRO-224  5.9 6.5 0.8 -2.9 69.2 84.4 3.8
 PRO-224   ASP-225  3.6 3.8 1.4 -11.9 14.1 20.7 -34.8
 ASP-225   THR-226  4.5 3.8 11.3 -8.0 79.4 77.2 16.1
 THR-226   PHE-227  4.5 3.8 2.5 9.7 92.9 115.6 2.8
 PHE-227   GLU-228  2.1 2.1 -5.2 4.6 140.7 123.1 1.3
 GLU-228   ARG-229  0.7 1.5 -2.0 -4.4 144.5 142.3 -9.6
 ARG-229   PHE-230  2.1 2.0 -4.4 19.2 90.0 77.9 -18.3
 PHE-230   GLN-231  5.0 5.4 -13.7 11.9 90.3 82.5 20.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-237   THR-238  12.1 12.2 1.8 -6.6 118.1 109.6 25.7
 THR-238   GLU-239  8.7 8.6 11.6 -9.8 133.6 134.4 -1.0
 GLU-239   LEU-240  8.7 7.8 -17.5 12.3 50.4 61.5 36.4
 LEU-240   SER-241  6.6 5.2 1.2 0.6 153.2 153.6 -17.2
 SER-241   GLU-242  7.2 5.5 -6.9 7.0 69.1 75.9 8.7
 GLU-242   PRO-243  8.1 6.7 4.0 -6.7 107.0 104.1 0.2
 PRO-243   LEU-244  6.1 5.5 -10.6 6.6 48.1 38.4 9.8
 LEU-244   GLU-245  2.8 2.5 -90.0 82.5 57.2 67.4 20.9
 GLU-245   THR-246  4.1 4.3 -2.7 10.1 123.4 127.8 17.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-466   SER-467  9.9 9.8 8.5 2.8 45.2 45.1 27.1
 SER-467   VAL-468  7.1 6.7 4.9 7.5 122.2 119.6 -14.6
 VAL-468   THR-469  3.7 3.9 5.7 -7.5 86.0 99.6 9.4
 THR-469   ALA-470  2.5 1.0 -14.0 -2.0 71.4 73.1 8.0
 ALA-470   MET-471  3.6 2.9 -15.8 6.1 23.2 22.2 58.2
 MET-471   ALA-472  4.3 3.8 -3.8 2.0 79.9 83.0 -31.2
 ALA-472   VAL-473  7.8 7.4 1.6 -15.2 167.7 158.0 29.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees