Rab Guanine Nucleotide Exchange Factor Sec2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-80   ALA-81  21.6 21.9 -10.5 -0.1 87.4 94.4 16.7
 ALA-81   LYS-82  19.2 19.9 -5.7 -2.7 138.9 131.4 -29.5
 LYS-82   GLU-83  20.7 22.4 49.3 -47.6 35.0 20.0 27.5
 GLU-83   ASN-84  20.4 21.6 13.4 -1.0 83.2 73.2 23.5
 ASN-84   GLU-85  16.7 17.8 17.9 -11.3 76.2 73.3 21.3
 GLU-85   LEU-86  16.3 19.1 -23.1 12.3 156.9 156.1 -45.7
 LEU-86   ARG-87  17.6 20.8 58.4 -46.3 50.9 50.9 38.2
 ARG-87   THR-88  16.0 17.6 -3.8 8.7 94.5 108.3 12.4
 THR-88   LYS-89  12.8 15.5 23.8 -11.1 49.8 36.4 45.5
 LYS-89   ALA-90  14.1 18.2 12.5 -43.6 19.6 32.7 -110.2
 ALA-90   GLU-91  14.9 17.0 72.7 -63.7 73.6 85.5 22.4
 GLU-91   GLU-92  11.6 13.3 -55.1 28.5 100.8 113.4 -28.7
 GLU-92   GLU-93  10.4 12.4 13.8 -21.3 25.2 27.4 -29.1
 GLU-93   ALA-94  12.3 15.0 5.9 -9.0 46.9 42.8 -2.6
 ALA-94   ASP-95  11.2 14.3 -12.6 24.4 102.4 118.0 14.7
 ASP-95   LYS-96  7.6 10.6 9.9 -10.9 74.3 60.7 2.9
 LYS-96   LEU-97  8.7 12.0 9.0 17.9 13.1 28.6 101.0
 LEU-97   ASN-98  10.1 13.7 -42.4 52.2 124.9 124.4 8.1
 ASN-98   LYS-99  7.0 10.5 -60.5 24.8 99.6 123.9 -75.1
 LYS-99   GLU-100  5.3 8.9 43.7 -45.3 36.6 57.3 3.3
 GLU-100   VAL-101  8.3 12.4 -1.1 -17.3 154.5 141.6 -43.7
 VAL-101   GLU-102  6.7 12.1 -7.2 -19.8 120.5 128.1 -42.9
 GLU-102   ASP-103  3.6 8.6 21.9 -5.9 51.2 67.1 33.3
 ASP-103   LEU-104  6.9 10.0 22.3 -36.9 42.0 40.1 -20.3
 LEU-104   THR-105  8.9 12.9 49.6 -38.2 31.4 43.5 64.0
 THR-105   ALA-106  6.3 10.1 -14.9 5.2 121.1 112.0 -11.1
 ALA-106   SER-107  5.8 7.9 -6.3 6.9 130.6 131.4 0.1
 SER-107   LEU-108  9.2 11.2 11.7 -19.5 44.0 32.2 -14.5
 LEU-108   PHE-109  8.9 11.3 1.0 29.1 41.2 56.6 75.2
 PHE-109   ASP-110  5.8 7.6 -19.2 -0.2 116.3 128.4 -27.6
 ASP-110   GLU-111  7.9 8.7 6.2 1.1 45.6 42.2 25.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees