Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  7.6 6.7 17.9 -8.1 108.0 115.5 -25.3
 LEU-108   GLY-109  4.3 3.2 -8.2 22.8 140.0 139.0 26.1
 GLY-109   ILE-110  2.3 1.6 -44.1 17.5 63.4 72.1 24.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-209   LEU-210  11.1 10.1 11.3 12.7 101.3 110.1 -27.3
 LEU-210   ILE-211  7.6 6.7 11.0 -4.1 158.1 157.3 -25.9
 ILE-211   ASP-212  6.6 6.7 175.0 160.9 106.3 130.1 -9.4
 ASP-212   SER-213  3.5 3.4 134.2 -95.7 68.8 57.3 71.7
 SER-213   LYS-214  4.4 3.1 -7.4 17.3 82.2 80.9 14.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-251   ARG-252  4.2 4.6 33.9 -3.8 142.2 141.3 -59.0
 ARG-252   GLY-253  4.9 5.8 -10.6 -109.0 53.7 60.8 228.6
 GLY-253   ASN-254  2.3 3.4 -134.0 42.3 24.3 96.4 133.0
 ASN-254   GLY-255  3.1 6.3 6.6 -171.3 103.8 120.7 -217.5
 GLY-255   CYS-256  6.5 5.3 156.1 40.9 67.4 77.4 -153.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees