Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-33   ASP-34  13.8 14.1 21.7 0.0 80.6 80.7 12.0
 ASP-34   LEU-35  13.8 14.5 67.1 -47.3 129.5 109.0 -78.7
 LEU-35   THR-36  16.9 17.4 43.3 -71.8 138.4 162.5 143.3
 THR-36   ASP-37  15.5 16.3 20.0 -36.7 149.3 127.3 79.5
 ASP-37   PRO-38  14.8 15.0 35.5 -5.6 89.1 89.4 -32.5
 PRO-38   ASN-39  11.8 11.7 3.5 3.1 123.2 115.5 -26.4
 ASN-39   MET-40  10.7 10.5 -7.2 6.5 118.9 126.2 6.2
 MET-40   LEU-41  11.3 11.3 -3.9 -2.6 128.8 129.7 -11.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-53   PHE-54  7.5 7.4 -9.8 9.2 65.0 67.5 7.2
 PHE-54   ASP-55  4.5 4.3 1.4 -12.7 67.6 66.1 -18.4
 ASP-55   GLY-56  7.0 6.7 7.3 -3.2 58.7 68.5 43.1
 GLY-56   THR-57  6.0 5.9 -23.4 27.6 136.7 135.7 45.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-129   THR-130  8.3 8.1 -1.7 -15.8 49.1 48.0 105.6
 THR-130   VAL-131  4.9 4.9 -5.0 6.1 91.9 89.2 -37.1
 VAL-131   VAL-132  3.3 2.8 -2.1 4.8 57.6 60.6 -43.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-135   ASN-136  6.5 6.2 7.9 -0.2 129.4 124.2 -28.5
 ASN-136   HIS-137  5.5 5.0 -3.7 3.1 120.3 122.3 37.9
 HIS-137   ASP-138  7.6 7.0 -6.9 0.0 60.7 61.1 1.0
 ASP-138   ILE-139  10.2 9.7 5.7 -0.3 115.3 116.9 -26.6
 ILE-139   LEU-140  9.1 8.6 4.4 -6.0 58.1 55.1 -6.4
 LEU-140   ASP-141  11.3 10.7 31.2 -32.8 100.1 99.1 2.0
 ASP-141   GLY-142  14.9 14.5 9.0 -11.1 40.2 35.4 -37.1
 GLY-142   THR-143  16.2 15.4 6.5 -19.4 91.0 89.7 14.5
 THR-143   GLU-144  17.7 17.4 16.0 1.6 61.8 80.9 12.8
 GLU-144   THR-145  15.2 14.8 -11.4 13.9 154.5 152.7 6.5
 THR-145   VAL-146  16.2 16.1 4.7 1.3 60.8 67.7 -12.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-149   ALA-150  3.3 3.5 25.6 -35.5 66.3 67.0 -26.7
 ALA-150   SER-151  4.0 4.5 15.9 -21.2 131.3 134.6 23.4
 SER-151   CYS-152  6.4 6.7 4.3 9.6 108.9 106.3 36.0
 CYS-152   THR-153  6.8 7.5 -11.7 6.7 128.5 138.4 -22.4
 THR-153   THR-154  9.3 9.8 -5.0 -1.0 142.3 141.6 -8.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees