Ubiquitin-Conjugating Enzyme E2 D3
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-16
PRO-17
3.7
4.3
-14.5
-13.3
160.9
156.2
-258.4
PRO-17
PRO-18
4.5
4.6
22.6
11.0
79.3
82.5
1.9
PRO-18
ALA-19
3.6
4.7
28.7
-37.1
72.4
82.5
57.1
ALA-19
GLN-20
7.4
8.4
180.0
-174.7
4.7
14.3
108.9
GLN-20
CYS-21
8.7
8.5
7.6
-26.0
58.6
42.8
-7.6
CYS-21
SER-22
5.8
5.6
14.0
-15.2
104.8
113.0
107.0
SER-22
ALA-23
6.3
5.5
-1.0
5.5
121.0
127.7
15.3
ALA-23
GLY-24
5.9
5.5
15.1
12.7
107.2
108.9
-97.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TRP-33
GLN-34
8.7
8.3
0.3
-5.1
54.8
53.3
-34.5
GLN-34
ALA-35
6.9
6.5
-1.2
-6.4
38.9
43.3
66.6
ALA-35
THR-36
4.6
4.3
3.0
-3.7
69.7
67.1
-19.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-52
THR-53
2.4
2.0
-7.2
-2.5
91.9
90.7
8.8
THR-53
ILE-54
4.4
4.1
-2.9
3.7
119.4
113.5
20.7
ILE-54
HIS-55
6.1
6.0
4.3
0.9
98.2
97.5
10.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-66
VAL-67
8.6
8.8
-0.2
-4.4
83.0
86.7
46.7
VAL-67
ALA-68
4.9
5.1
1.4
3.6
39.2
36.8
16.7
ALA-68
PHE-69
2.6
2.9
3.6
-4.9
95.1
95.6
22.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-76
ASN-77
14.8
14.8
-8.8
6.3
105.6
100.6
8.3
ASN-77
ILE-78
12.5
12.4
-8.0
-2.1
78.9
76.3
37.0
ILE-78
ASN-79
9.1
9.0
-1.0
-22.3
4.1
16.2
262.9
ASN-79
SER-80
8.3
8.4
14.6
-12.2
111.6
106.1
-84.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-103
LEU-104
3.1
3.3
0.7
-0.4
112.1
112.9
14.9
LEU-104
SER-105
5.9
5.9
1.0
-0.5
62.3
66.8
-11.9
SER-105
ILE-106
8.5
8.6
4.2
-1.7
28.8
25.1
30.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees