Maltose Abc Transporter, Periplasmic Maltose- Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-108   ALA-109  9.1 8.5 8.2 8.7 59.3 62.9 10.1
 ALA-109   MET-110  5.4 4.8 -10.0 -13.8 50.1 52.8 36.3
 MET-110   GLU-111  1.9 1.3 -12.6 20.1 121.4 109.8 13.2
 GLU-111   ALA-112  2.8 2.5 -40.2 9.5 64.7 69.2 35.2
 ALA-112   ILE-113  5.8 5.6 9.9 -7.8 56.7 50.2 3.3
 ILE-113   ALA-114  9.3 9.1 -1.9 5.1 126.0 124.3 -9.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-262   VAL-263  7.5 7.6 5.7 -26.5 133.6 132.4 27.7
 VAL-263   GLY-264  4.2 4.1 -0.8 11.7 122.1 122.0 14.2
 GLY-264   VAL-265  2.3 1.6 -11.1 -14.3 63.1 57.8 45.1
 VAL-265   GLN-266  3.0 2.4 7.5 -10.0 78.2 75.6 5.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-309   VAL-310  12.8 12.6 -9.3 10.1 113.2 114.1 0.3
 VAL-310   LEU-311  10.3 9.8 2.6 -0.8 78.8 66.9 -0.7
 LEU-311   GLU-312  7.2 7.3 -7.9 5.7 151.5 154.8 -3.5
 GLU-312   LEU-313  9.2 9.8 -3.7 -7.8 142.8 133.9 -18.7
 LEU-313   VAL-314  8.5 9.2 7.1 -1.0 78.3 75.5 9.7
 VAL-314   LYS-315  4.8 5.5 5.1 -9.8 91.6 77.6 2.8
 LYS-315   ASP-316  4.5 5.0 25.3 30.5 47.8 30.7 78.8
 ASP-316   ASN-317  3.3 3.2 -24.9 -15.3 98.0 76.3 5.1
 ASN-317   PRO-318  0.5 1.2 -11.9 -17.0 71.9 63.3 20.3
 PRO-318   ASP-319  4.0 4.9 1.7 13.3 155.9 155.8 -25.2
 ASP-319   VAL-320  4.7 5.0 -0.2 -10.5 44.6 44.4 18.0
 VAL-320   VAL-321  1.6 2.2 11.3 -7.6 93.1 104.8 -0.5
 VAL-321   GLY-322  4.6 5.5 -0.3 -1.2 57.5 53.6 2.8
 GLY-322   PHE-323  7.0 7.7 -2.3 10.3 7.5 18.1 -14.3
 PHE-323   THR-324  5.4 5.7 -10.0 -10.5 65.4 60.8 32.0
 THR-324   LEU-325  5.2 4.9 9.4 -2.1 99.0 106.2 -11.9
 LEU-325   SER-326  8.9 8.7 2.5 0.8 143.8 142.6 -6.6
 SER-326   ALA-327  9.2 8.9 -4.4 5.0 34.5 35.3 1.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees