Mhc Class I H-2dd Heavy Chain

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-170   TYR-171  1.9 2.1 3.0 -1.0 146.4 141.6 -6.1
 TYR-171   LEU-172  1.6 2.0 13.6 -22.9 109.6 113.8 24.0
 LEU-172   LYS-173  2.5 2.0 -30.4 30.4 119.3 128.3 25.9
 LYS-173   ASN-174  3.4 3.4 24.4 -57.8 107.0 83.8 39.7
 ASN-174   GLY-175  3.8 3.8 41.3 -39.3 149.0 151.1 4.2
 GLY-175   ASN-176  4.2 4.4 0.8 -15.5 101.0 125.6 27.8
 ASN-176   ALA-177  6.3 5.3 10.3 -2.7 138.0 131.7 -29.7
 ALA-177   THR-178  8.8 8.3 -19.0 62.0 15.6 29.6 -141.8
 THR-178   LEU-179  6.8 6.7 -23.4 -9.6 74.6 61.7 26.9
 THR-178   LEU-179  6.8 6.7 -23.4 -9.6 74.6 61.7 26.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-178   LEU-179  6.8 6.7 -23.4 -9.6 74.6 61.7 26.9
 THR-178   LEU-179  6.8 6.7 -23.4 -9.6 74.6 61.7 26.9
 LEU-179   LEU-180  3.9 3.9 -100.5 125.3 73.1 72.5 29.0
 LEU-180   ARG-181  7.4 6.6 -76.0 49.1 49.0 36.5 83.9
 ARG-181   THR-182  8.7 8.7 -68.3 62.1 37.4 37.8 8.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees